chr10:123033549:G>A Detail (hg19)

Information

Genome

Assembly Position
hg19 chr10:123,033,549-123,033,549
hg38 chr10:121,274,035-121,274,035 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.170
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.262 Malignant neoplasm of prostate The genotypes of 4 single nucleotide polymorphisms previously associated with se... BeFree 23246478 Detail
0.080 prostate carcinoma The genotypes of 4 single nucleotide polymorphisms previously associated with se... BeFree 23246478 Detail
Annotation

Annotations

DescrptionSourceLinks
The genotypes of 4 single nucleotide polymorphisms previously associated with serum prostate specifi... DisGeNET Detail
The genotypes of 4 single nucleotide polymorphisms previously associated with serum prostate specifi... DisGeNET Detail
Gene
-
dbSNP
rs10788160 dbSNP
Genome
hg19
Position
chr10:123,033,549-123,033,549
Variant Type
snv
Reference Allele
G
Alternative Allele
A
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs10788160
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.1704
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
2856
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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